关于【r】的问题- 第1页

Carly

Asked: 2022-05-16 21:30:51 +0800 CST

在 R 中安装 DAAG 库

0

我有 Linux Mint。请问在R编程语言中安装DAAG包有什么问题？

> install.packages("DAAG")

It gives an error:

Installing package into ‘/home/linux/R/x86_64-pc-linux-gnu-library/4.1’
(as ‘lib’ is unspecified)
also installing the dependencies ‘jpeg’, ‘latticeExtra’

trying URL 'https://cloud.r-project.org/src/contrib/jpeg_0.1-9.tar.gz'
Content type 'application/x-gzip' length 18596 bytes (18 KB)
==================================================
downloaded 18 KB

trying URL 'https://cloud.r-project.org/src/contrib/latticeExtra_0.6-29.tar.gz'
Content type 'application/x-gzip' length 1292315 bytes (1.2 MB)
==================================================
downloaded 1.2 MB

trying URL 'https://cloud.r-project.org/src/contrib/DAAG_1.24.tar.gz'
Content type 'application/x-gzip' length 1431281 bytes (1.4 MB)
==================================================
downloaded 1.4 MB

* installing *source* package ‘jpeg’ ...
** package ‘jpeg’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
gcc -std=gnu99 -std=gnu11 -I"/usr/share/R/include" -DNDEBUG      -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-J7pprH/r-base-4.1.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c read.c -o read.o
In file included from read.c:1:0:
rjcommon.h:11:10: fatal error: jpeglib.h: Adresář nebo soubor neexistuje
 #include <jpeglib.h>
          ^~~~~~~~~~~
compilation terminated.
/usr/lib/R/etc/Makeconf:168: recipe for target 'read.o' failed
make: *** [read.o] Error 1
ERROR: compilation failed for package ‘jpeg’
* removing ‘/home/linux/R/x86_64-pc-linux-gnu-library/4.1/jpeg’
Warning in install.packages :
  installation of package ‘jpeg’ had non-zero exit status
ERROR: dependency ‘jpeg’ is not available for package ‘latticeExtra’
* removing ‘/home/linux/R/x86_64-pc-linux-gnu-library/4.1/latticeExtra’
Warning in install.packages :
  installation of package ‘latticeExtra’ had non-zero exit status
ERROR: dependency ‘latticeExtra’ is not available for package ‘DAAG’
* removing ‘/home/linux/R/x86_64-pc-linux-gnu-library/4.1/DAAG’
Warning in install.packages :
  installation of package ‘DAAG’ had non-zero exit status

The downloaded source packages are in
    ‘/tmp/Rtmphv8qDd/downloaded_packages’

请问为什么包'jpeg'的编译失败了？如何纠正问题？非常感谢

咨询后：

我已经安装了 libjpeg-turbo8-dev 并再次尝试安装。我获得了：

install.packages("DAAG")
Installing package into ‘/home/linux/R/x86_64-pc-linux-gnu-library/4.1’
(as ‘lib’ is unspecified)
also installing the dependencies ‘jpeg’, ‘latticeExtra’

trying URL 'https://cloud.r-project.org/src/contrib/jpeg_0.1-9.tar.gz'
Content type 'application/x-gzip' length 18596 bytes (18 KB)
==================================================
downloaded 18 KB

trying URL 'https://cloud.r-project.org/src/contrib/latticeExtra_0.6-29.tar.gz'
Content type 'application/x-gzip' length 1292315 bytes (1.2 MB)
==================================================
downloaded 1.2 MB

trying URL 'https://cloud.r-project.org/src/contrib/DAAG_1.24.tar.gz'
Content type 'application/x-gzip' length 1431281 bytes (1.4 MB)
==================================================
downloaded 1.4 MB

* installing *source* package ‘jpeg’ ...
** package ‘jpeg’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
gcc -std=gnu99 -std=gnu11 -I"/usr/share/R/include" -DNDEBUG      -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-J7pprH/r-base-4.1.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c read.c -o read.o
gcc -std=gnu99 -std=gnu11 -I"/usr/share/R/include" -DNDEBUG      -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-J7pprH/r-base-4.1.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c reg.c -o reg.o
gcc -std=gnu99 -std=gnu11 -I"/usr/share/R/include" -DNDEBUG      -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-J7pprH/r-base-4.1.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c write.c -o write.o
gcc -std=gnu99 -std=gnu11 -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o jpeg.so read.o reg.o write.o -ljpeg -L/usr/lib/R/lib -lR
installing to /home/linux/R/x86_64-pc-linux-gnu-library/4.1/00LOCK-jpeg/00new/jpeg/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (jpeg)
* installing *source* package ‘latticeExtra’ ...
** package ‘latticeExtra’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (latticeExtra)
* installing *source* package ‘DAAG’ ...
** package ‘DAAG’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (DAAG)

The downloaded source packages are in
    ‘/tmp/RtmpMMMVbl/downloaded_packages’
> library(DAAG)
Loading required package: lattice
> install.packages("lattice")
Error in install.packages : Updating loaded packages

Restarting R session...

> install.packages("lattice")
Installing package into ‘/home/linux/R/x86_64-pc-linux-gnu-library/4.1’
(as ‘lib’ is unspecified)
trying URL 'https://cloud.r-project.org/src/contrib/lattice_0.20-45.tar.gz'
Content type 'application/x-gzip' length 399470 bytes (390 KB)
==================================================
downloaded 390 KB

* installing *source* package ‘lattice’ ...
** package ‘lattice’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
gcc -std=gnu99 -std=gnu11 -I"/usr/share/R/include" -DNDEBUG      -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-J7pprH/r-base-4.1.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c init.c -o init.o
gcc -std=gnu99 -std=gnu11 -I"/usr/share/R/include" -DNDEBUG      -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-J7pprH/r-base-4.1.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c threeDplot.c -o threeDplot.o
gcc -std=gnu99 -std=gnu11 -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o lattice.so init.o threeDplot.o -L/usr/lib/R/lib -lR
installing to /home/linux/R/x86_64-pc-linux-gnu-library/4.1/00LOCK-lattice/00new/lattice/libs
** R
** data
*** moving datasets to lazyload DB
** demo
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (lattice)

The downloaded source packages are in
    ‘/tmp/RtmpU70gsO/downloaded_packages’
> library(DAAG)
Loading required package: lattice
> install.packages("lattice")
Error in install.packages : Updating loaded packages

Restarting R session...

> install.packages("lattice")
Installing package into ‘/home/linux/R/x86_64-pc-linux-gnu-library/4.1’
(as ‘lib’ is unspecified)
trying URL 'https://cloud.r-project.org/src/contrib/lattice_0.20-45.tar.gz'
Content type 'application/x-gzip' length 399470 bytes (390 KB)
==================================================
downloaded 390 KB

* installing *source* package ‘lattice’ ...
** package ‘lattice’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
gcc -std=gnu99 -std=gnu11 -I"/usr/share/R/include" -DNDEBUG      -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-J7pprH/r-base-4.1.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c init.c -o init.o
gcc -std=gnu99 -std=gnu11 -I"/usr/share/R/include" -DNDEBUG      -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-J7pprH/r-base-4.1.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c threeDplot.c -o threeDplot.o
gcc -std=gnu99 -std=gnu11 -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o lattice.so init.o threeDplot.o -L/usr/lib/R/lib -lR
installing to /home/linux/R/x86_64-pc-linux-gnu-library/4.1/00LOCK-lattice/00new/lattice/libs
** R
** data
*** moving datasets to lazyload DB
** demo
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (lattice)

The downloaded source packages are in
    ‘/tmp/RtmpBsoBJd/downloaded_packages’

Carly

Asked: 2021-11-05 05:07:14 +0800 CST

如何在 Linux mint 上更新 R

1

我无法在 4.* 上更新 R 版本 3.*

我根据这个页面做了什么：

I checked /etc/apt/sources.list

#deb cdrom:[Linux Mint 19.2 Tina - Release amd64 20190729]/ bionic contrib main non-free

我跑了：

sudo apt-key adv --keyserver keyserver.ubuntu.com --recv-keys E298A3A825C0D65DFD57CBB651716619E084DAB9
[sudo] heslo pro linux:    
Executing: /tmp/apt-key-gpghome.H9fjVZrS2l/gpg.1.sh --keyserver keyserver.ubuntu.com --recv-keys E298A3A825C0D65DFD57CBB651716619E084DAB9
gpg: klíč 51716619E084DAB9: „Michael Rutter <[email protected]>“ 1 nový podpis
gpg: Celkový počet zpracovaných klíčů: 1
gpg:         nové podpisy: 1
linux@linux-HP-Pavilion-dv6-Notebook-PC:~$ sudo add-apt-repository 'deb https://cloud.r-project.org/bin/linux/ubuntu focal-cran40/'
linux@linux-HP-Pavilion-dv6-Notebook-PC:~$ sudo apt install r-base
Načítají se seznamy balíků… Hotovo
Vytváří se strom závislostí       
Načítají se stavové informace… Hotovo
r-base je již nejnovější verze (3.4.4-1ubuntu1).
Následující balíky byly nainstalovány automaticky a již nejsou potřeba:
  libllvm9 linux-headers-4.15.0-20 linux-headers-4.15.0-20-generic
  linux-image-4.15.0-128-generic linux-image-4.15.0-20-generic
  linux-image-4.15.0-74-generic linux-modules-4.15.0-128-generic
  linux-modules-4.15.0-20-generic linux-modules-4.15.0-74-generic
  linux-modules-extra-4.15.0-128-generic linux-modules-extra-4.15.0-20-generic
  linux-modules-extra-4.15.0-74-generic
Pro jejich odstranění použijte „sudo apt autoremove“.
0 aktualizováno, 0 nově instalováno, 0 k odstranění a 245 neaktualizováno.
linux@linux-HP-Pavilion-dv6-Notebook-PC:~$ sudo apt install r-base
Načítají se seznamy balíků… Hotovo
Vytváří se strom závislostí       
Načítají se stavové informace… Hotovo
r-base je již nejnovější verze (3.4.4-1ubuntu1).
Následující balíky byly nainstalovány automaticky a již nejsou potřeba:
  libllvm9 linux-headers-4.15.0-20 linux-headers-4.15.0-20-generic
  linux-image-4.15.0-128-generic linux-image-4.15.0-20-generic
  linux-image-4.15.0-74-generic linux-modules-4.15.0-128-generic
  linux-modules-4.15.0-20-generic linux-modules-4.15.0-74-generic
  linux-modules-extra-4.15.0-128-generic linux-modules-extra-4.15.0-20-generic
  linux-modules-extra-4.15.0-74-generic
Pro jejich odstranění použijte „sudo apt autoremove“.
0 aktualizováno, 0 nově instalováno, 0 k odstranění a 245 neaktualizováno.
linux@linux-HP-Pavilion-dv6-Notebook-PC:~$ r -- version

Příkaz 'r' nebyl nalezen, ale je možné jej nainstalovat pomocí:

sudo apt install r-cran-littler

linux@linux-HP-Pavilion-dv6-Notebook-PC:~$ R --version
R version 3.4.4 (2018-03-15) -- "Someone to Lean On"
Copyright (C) 2018 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under the terms of the
GNU General Public License versions 2 or 3.
For more information about these matters see
http://www.gnu.org/licenses/.

版本还是3.4.4。

AliAs

Asked: 2019-05-28 02:18:55 +0800 CST

从 Docker 映像中卸载 R

1

我努力了：

sudo apt-get 删除 r-base

sudo apt-get remove r-base-core

删除 .libPaths() 中的所有内容

问题是，我使用的是安装了 R的Docker 容器。当我运行这些命令时，终端会提示：

未安装软件包“r-base-core”，因此未删除

我尝试从为使用 R 构建的容器中卸载 R 的原因是我真正需要的是使用 Oracle R Enterprise，它仅适用于 R 版本 3.3.0。容器中已经安装的版本是 3.6.0

有了这一套，我可以想到 2 种可能的解决方案来解决我的问题：

删除 .libPaths() 显示的路径中的所有内容并希望它有效。如果有人能在我尝试之前确认这是否可行并将一切搞砸，那就太棒了。
找到一种从 3.6.0 版本降级到 3.3.0 版本的方法，这样我就不必再次卸载并重新安装 R。

JiaHao Xu

Asked: 2019-03-07 01:31:33 +0800 CST

如何设置 R 使用我的终端的所有宽度？

3

我R在终端中运行交互式，但它并没有使用终端的所有宽度。它只使用了 226 个字符中的 72 个字符。读取任何以交互方式显示的有很多列的数据都非常不舒服R。

我正在urxvt使用debian 9,8.

Eric Lino

Asked: 2018-04-11 13:38:24 +0800 CST

无法在 R 上下载包（RStudio 和终端都不是）

1

我对 linux 很陌生，我唯一的经验是使用以前属于其他人的计算机，这意味着一切都已经配置/下载，我在它上面的工作没有问题，这涉及使用一些 GIS 工具和 RStudio。

结果三天前我从老板那里收到了一台新电脑，我决定保持传统并安装 linux。我所有的同事都在使用 Mint 18.3，所以我下载并安装了它。事实证明，这并不像我想象的那么简单。

在阅读了这里发布的一堆论坛和问题之后，我设法更新了我的 sources.list 并插入了一个 CRAN 镜像以下载最新版本的 R (3.4.4)。RStudio 很快就认出了它。然而，安装新包几乎是不可能的，因为即使是“本机”功能，例如导入数据集也被禁用，因为无法下载包。

我尝试通过终端打开 R 并使用install.packages功能安装包，但问题仍然存在。如何修复我的 RStudio 以正确安装软件包？

下面是日志的副本（注意我手动指定了镜像）：

> install.packages("Rcpp",repo="https://cloud.r-project.org/", type="source")
Installing package into ‘/home/iis/R/x86_64-pc-linux-gnu-library/3.4’
(as ‘lib’ is unspecified)
trying URL 'https://cloud.r-project.org/src/contrib/Rcpp_0.12.16.tar.gz'
Content type 'application/x-gzip' length 3763400 bytes (3.6 MB)
==================================================
downloaded 3.6 MB

* installing *source* package ‘Rcpp’ ...
** package ‘Rcpp’ successfully unpacked and MD5 sums checked
** libs
g++  -I/usr/share/R/include -DNDEBUG -I../inst/include/     -fpic  -g -O2         -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time     -D_FORTIFY_SOURCE=2 -g  -c Date.cpp -o Date.o
/bin/bash: g++: command not found
/usr/lib/R/etc/Makeconf:168: recipe for target 'Date.o' failed
make: *** [Date.o] Error 127
ERROR: compilation failed for package ‘Rcpp’
* removing ‘/home/iis/R/x86_64-pc-linux-gnu-library/3.4/Rcpp’
Warning in install.packages :
  installation of package ‘Rcpp’ had non-zero exit status

同样，由于我对 linux 很陌生，我真的不知道应该提供哪些信息来更好地帮助您，但请记住，一切都可能是默认/出厂设置。如果您需要其他信息，我可以为您提供（在适当的说明下）

joshiricky

Asked: 2017-12-20 05:10:06 +0800 CST

从乘法表示的第二个变量中提取具有最大值的行

-1

我有一个我似乎无法解决的问题。

我有一个巨大的制表符分隔的文本文件，类似于：

chr 10 20 20 a
chr 30 40 10 b
chr 30 40 15 b
chr 30 40 11 b

我需要的是：1）提取所有唯一行2）在第5列多次表示的情况下（例如b），第4列中具有最大值的行。

所以我在上面的例子中需要的行是：

chr 10 20 20 a （这是唯一的行） 
chr 30 40 15 b （这是当第 5 列被多次表示时，第 4 列中具有最大值的行。

有没有一种简单的方法可以做到这一点？

在 R 中安装 DAAG 库

如何在 Linux mint 上更新 R

从 Docker 映像中卸载 R

如何设置 R 使用我的终端的所有宽度？

无法在 R 上下载包（RStudio 和终端都不是）

从乘法表示的第二个变量中提取具有最大值的行

模块 i915 可能缺少固件 /lib/firmware/i915/*

无法获取 jessie backports 存储库

如何将 GPG 私钥和公钥导出到文件

我们如何运行存储在变量中的命令？

如何配置 systemd-resolved 和 systemd-networkd 以使用本地 DNS 服务器来解析本地域和远程 DNS 服务器来解析远程域？

dist-upgrade 后 Kali Linux 中的 apt-get update 错误 [重复]

如何从 systemctl 服务日志中查看最新的 x 行

Nano - 跳转到文件末尾

grub 错误：你需要先加载内核

如何下载软件包而不是使用 apt-get 命令安装它？

问题[r](unix)