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ElToro1966's questions

Martin Hope
ElToro1966
Asked: 2021-05-21 10:39:58 +0800 CST
  • 1

我正在尝试在 R 中安装 pgmm 库的特定版本，但它失败了：

> library(fs)
> old_lib <- path_home_r("R/x86_64-pc-linux-gnu-library/old-versions/")
> library(remotes)
> install_version("pgmm", version = "1.1", lib = old_lib, build = TRUE)
Downloading package from url: https://cloud.r-project.org/src/contrib/Archive/pgmm/pgmm_1.1.tar.gz
Running `R CMD build`...
* checking for file ‘/tmp/Rtmp6Jj3B0/remotes3b5e8d11b5fe/pgmm/DESCRIPTION’ ... OK
* preparing ‘pgmm’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* checking for LF line-endings in source and make files and shell scripts
* checking for empty or unneeded directories
* looking to see if a ‘data/datalist’ file should be added
* building ‘pgmm_1.1.tar.gz’
* installing *source* package ‘pgmm’ ...
** using staged installation
** libs
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG      -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-PsrVor/r-base-4.0.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c aecm.c -o aecm.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG      -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-PsrVor/r-base-4.0.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c gaussj.c -o gaussj.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG      -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-PsrVor/r-base-4.0.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c myalloc.c -o myalloc.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG      -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-PsrVor/r-base-4.0.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c pgmm.c -o pgmm.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG      -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-PsrVor/r-base-4.0.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c updates.c -o updates.o
gcc -std=gnu99 -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o pgmm.so aecm.o gaussj.o myalloc.o pgmm.o updates.o -L/usr/lib/R/lib -lR
/usr/bin/ld: gaussj.o:/tmp/RtmpGlEBF9/R.INSTALL3b70d1f18017d/pgmm/src/functions.h:4: multiple definition of `testfunc2'; aecm.o:/tmp/RtmpGlEBF9/R.INSTALL3b70d1f18017d/pgmm/src/functions.h:4: first defined here
/usr/bin/ld: gaussj.o:/tmp/RtmpGlEBF9/R.INSTALL3b70d1f18017d/pgmm/src/functions.h:1: multiple definition of `testfunc'; aecm.o:/tmp/RtmpGlEBF9/R.INSTALL3b70d1f18017d/pgmm/src/functions.h:1: first defined here
/usr/bin/ld: myalloc.o:/tmp/RtmpGlEBF9/R.INSTALL3b70d1f18017d/pgmm/src/functions.h:4: multiple definition of `testfunc2'; aecm.o:/tmp/RtmpGlEBF9/R.INSTALL3b70d1f18017d/pgmm/src/functions.h:4: first defined here
/usr/bin/ld: myalloc.o:/tmp/RtmpGlEBF9/R.INSTALL3b70d1f18017d/pgmm/src/functions.h:1: multiple definition of `testfunc'; aecm.o:/tmp/RtmpGlEBF9/R.INSTALL3b70d1f18017d/pgmm/src/functions.h:1: first defined here
/usr/bin/ld: pgmm.o:/tmp/RtmpGlEBF9/R.INSTALL3b70d1f18017d/pgmm/src/functions.h:4: multiple definition of `testfunc2'; aecm.o:/tmp/RtmpGlEBF9/R.INSTALL3b70d1f18017d/pgmm/src/functions.h:4: first defined here
/usr/bin/ld: pgmm.o:/tmp/RtmpGlEBF9/R.INSTALL3b70d1f18017d/pgmm/src/functions.h:1: multiple definition of `testfunc'; aecm.o:/tmp/RtmpGlEBF9/R.INSTALL3b70d1f18017d/pgmm/src/functions.h:1: first defined here
/usr/bin/ld: updates.o:/tmp/RtmpGlEBF9/R.INSTALL3b70d1f18017d/pgmm/src/functions.h:4: multiple definition of `testfunc2'; aecm.o:/tmp/RtmpGlEBF9/R.INSTALL3b70d1f18017d/pgmm/src/functions.h:4: first defined here
/usr/bin/ld: updates.o:/tmp/RtmpGlEBF9/R.INSTALL3b70d1f18017d/pgmm/src/functions.h:1: multiple definition of `testfunc'; aecm.o:/tmp/RtmpGlEBF9/R.INSTALL3b70d1f18017d/pgmm/src/functions.h:1: first defined here
collect2: error: ld returned 1 exit status
make: *** [/usr/share/R/share/make/shlib.mk:6: pgmm.so] Error 1
ERROR: compilation failed for package ‘pgmm’
* removing ‘/home/eric/R/x86_64-pc-linux-gnu-library/old-versions/pgmm’
Warning message:
In i.p(...) :
  installation of package ‘/tmp/Rtmp6Jj3B0/file3b5e87e350a98/pgmm_1.1.tar.gz’ had non-zero exit status

“R/x86_64-pc-linux-gnu-library/old-versions/”目录存在，1.1版本的pgmm包也存在。非常感谢任何修复建议。

package-management
Martin Hope
ElToro1966
Asked: 2019-10-05 10:05:13 +0800 CST
  • 1

我刚刚在运行 Ubuntu 18.04 LTS 的笔记本电脑上运行了 chkrootkit，除以下内容外，一切都很清楚：

    Searching for suspicious files and dirs, it may take a while... 
The following suspicious files and directories were found: 
/usr/lib/jvm/.java-1.11.0-openjdk-amd64.jinfo /usr/lib/debug/.build-id 
/usr/lib/rstudio/www/.gitignore 
/usr/lib/rstudio/resources/templates/.gitignore 
/lib/modules/5.0.0-27-generic/vdso/.build-id 
/lib/modules/5.0.0-29-generic/vdso/.build-id
/usr/lib/debug/.build-id 
/lib/modules/5.0.0-27-generic/vdso/.build-id 
/lib/modules/5.0.0-29-generic/vdso/.build-id

这些警告中的任何一个或所有都是误报吗？我对每个警告都进行了相当彻底的搜索，结果却是空的。任何帮助将非常感激。

security 18.04 rstudio chkrootkit
Martin Hope
ElToro1966
Asked: 2018-08-01 01:32:52 +0800 CST
  • 2

我在/usr/local/bin/minikube中有应用程序minikube。当我用整个路径做minikube 版本时，我得到：

$ /usr/local/bin/minikube version
minikube version: v0.28.2

当我在没有路径的情况下执行minikube 版本时，我得到：

$ minikube version
bash: /snap/bin/minikube: No such file or directory

/ usr/local/bin包含在PATH中：

$ echo $PATH
//usr/local/bin:/home/eric/.local/bin:/home/eric/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/snap/bin

为什么在没有完整路径的情况下找不到minikube ， /snap/bin与什么有什么关系？非常感谢任何帮助！

根据@mpr 下面的评论添加了信息： 前段时间，我用snap安装了minikube ，如下所示：

sudo snap install minikube

它后来被删除

sudo snap remove minikube

很久以后，忘记了snap安装，我使用curl从 minikube 站点安装了它：

curl -Lo minikube https://storage.googleapis.com/minikube/releases/v0.28.2/minikube-linux-amd64 && chmod +x minikube && sudo mv minikube /usr/local/bin/
command-line bash paths snap 18.04