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Curtis Kelsey's questions

Martin Hope
Curtis Kelsey
Asked: 2016-07-13 07:32:48 +0800 CST
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** 而不是投反对票，而是表达如何改进帖子。谢谢！

我正在尝试为安装在 CentOS 5.11 系统上的 R (3.2.3) 安装 igraph。错误的尾部如下所示：

foreign-graphml.c:65: warning: excess elements in struct initializer
foreign-graphml.c:65: warning: (near initialization for ‘blankEntityStruct’)
foreign-graphml.c: In function ‘igraph_read_graph_graphml’:
foreign-graphml.c:1330: error: ‘XML_PARSE_HUGE’ undeclared (first use in this function)
foreign-graphml.c:1330: error: (Each undeclared identifier is reported only once
foreign-graphml.c:1330: error: for each function it appears in.)
make: *** [foreign-graphml.o] Error 1
ERROR: compilation failed for package ‘igraph’
* removing ‘/usr/lib64/R/library/igraph’

The downloaded source packages are in
    ‘/tmp/RtmpBDaixr/downloaded_packages’
Updating HTML index of packages in '.Library'
Making 'packages.html' ... done
Warning message:
In install.packages("igraph") :
  installation of package ‘igraph’ had non-zero exit status

XML_PARSE_HUGE 对我来说很突出。快速谷歌发现它直到 libxml2 2.7.3 ( https://lists.nongnu.org/archive/html/igraph-help/2015-10/msg00022.html ) 才出现。看起来我需要在下面的链接中为之前在本网站上遇到过的机器构建一个更新的版本。

在 CentOS 5.X 上安装 libxml2 2.7.X

当我为它运行安装时

yum localinstall --nogpgcheck /usr/src/redhat/RPMS/x86_64/libxml2-2.7.8-1.x86_64.rpm

我把这个放在尾巴上

Error: Missing Dependency: libxml2.so.2 is needed by package eel2-2.16.1-1.el5.i386 (installed)
Error: Missing Dependency: libxml2.so.2 is needed by package evolution-data-server-1.12.3-18.el5.i386 (installed)
Error: Missing Dependency: libxml2.so.2 is needed by package 1:gnome-utils-2.16.0-5.el5.i386 (installed)
Error: Missing Dependency: libxml2.so.2 is needed by package libxslt-1.1.17-4.el5_8.3.i386 (installed)
Error: Missing Dependency: libxml2.so.2 is needed by package 7:kdenetwork-3.5.4-13.el5_6.1.i386 (installed)
Error: Missing Dependency: libxml2.so.2 is needed by package gnome-media-2.16.1-3.el5.i386 (installed)
Error: Missing Dependency: libxml2.so.2 is needed by package gnome-pilot-2.0.13-16.i386 (installed)
Error: Missing Dependency: libxml2.so.2 is needed by package 1:control-center-2.16.0-16.el5.i386 (installed)
You could try using --skip-broken to work around the problem
You could try running: package-cleanup --problems
                    package-cleanup --dupes
                    rpm -Va --nofiles --nodigest

我想也许它想要一个 32 位包

rpmbuild --target i386 -ba /usr/src/redhat/SPECS/libxml2.spec
yum localinstall --nogpgcheck /usr/src/redhat/RPMS/i386/libxml2-2.7.8-1.i386.rpm

哪个尾巴

Error: Missing Dependency: libxml2.so.2()(64bit) is needed by package gtkhtml2-2.11.0-3.x86_64 (installed)
Error: Missing Dependency: libxml2.so.2()(64bit) is needed by package nautilus-2.16.2-10.el5.x86_64 (installed)
Error: Missing Dependency: libxml2.so.2()(64bit) is needed by package libgnome-java-2.12.4-3.fc6.x86_64 (installed)
Error: Missing Dependency: libxml2.so.2()(64bit) is needed by package nautilus-cd-burner-2.16.0-7.el5.x86_64 (installed)
Error: Missing Dependency: libxml2.so.2()(64bit) is needed by package gnome-spell-1.0.7-3.1.x86_64 (installed)
Error: Missing Dependency: libxml2.so.2()(64bit) is needed by package 1:gnome-utils-2.16.0-5.el5.x86_64 (installed)
Error: Missing Dependency: libxml2.so.2()(64bit) is needed by package gok-1.2.0-2.el5.x86_64 (installed)
Error: Missing Dependency: libxml2.so.2()(64bit) is needed by package libglade-java-2.12.5-3.fc6.x86_64 (installed)
Error: Missing Dependency: libxml2.so.2()(64bit) is needed by package evolution-webcal-2.7.1-6.x86_64 (installed)
You could try using --skip-broken to work around the problem
You could try running: package-cleanup --problems
                    package-cleanup --dupes
                    rpm -Va --nofiles --nodigest

尝试使用 --skip-broken 和 package-cleanup 时我有点紧张，因为我需要有一个可靠的迁移补丁到/从更改（它在生产机器上）而且我并不精通这一切就像我应该的那样。我可能必须启动一个虚拟机才能继续前进。最终，我所寻找的只是在系统上运行的 R igraph 包。有没有人有任何想法？

centos centos5